Compatibility with other Plugins which insert menus into WP Dashboard Area

I have installed the WPMU Dev Dasbboard, and so far haven’t had any problems with its operation. However I have a project management plugin ( ) installed and noticed that upon the activation of the Dev Dashboard, it fully removed the project plugins entry into the dashboard area and I can now no longer use this plugin.

Is there a safer method for inserting your plugin to that area of WP admin as any other plugins in the area (like WooDojo as well) get overridden and are inaccessable and become un-usable.